STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0602PFAM: OmpA/MotB domain protein; KEGG: swi:Swit_1259 OmpA/MotB domain-containing protein. (326 aa)    
Predicted Functional Partners:
ZMO0603
KEGG: swi:Swit_1260 flagellar motor protein MotA.
 0.999
ZMO0616
PFAM: MotA/TolQ/ExbB proton channel; KEGG: swi:Swit_1272 MotA/TolQ/ExbB proton channel.
  
 0.992
ZMO0605
KEGG: swi:Swit_1262 flagellar hook-associated protein FlgK; TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein.
 
  
 0.952
ZMO0078
PFAM: CheW domain protein; KEGG: acr:Acry_2709 putative CheW protein.
  
  
 0.938
ZMO0609
KEGG: swi:Swit_1266 flagellar basal body rod protein FlgG; TIGRFAM: flagellar basal-body rod protein FlgG; flagellar basal-body rod FlgG family protein; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
 
 
 0.937
ZMO0617
KEGG: swi:Swit_1273 hypothetical protein.
 
  
  0.935
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.919
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.916
ZMO0626
KEGG: swi:Swit_1281 RNA polymerase, sigma 28 subunit, FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2.
  
  
 0.903
ZMO0634
KEGG: swi:Swit_1287 flagellar M-ring protein FliF; TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein.
 
  
 0.903
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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