STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0693PFAM: OsmC family protein; KEGG: mrd:Mrad2831_2850 OsmC family protein. (141 aa)    
Predicted Functional Partners:
ZMO0918
Catalase; KEGG: psp:PSPPH_4565 catalase KatA; PFAM: Catalase domain protein; Belongs to the catalase family.
  
  
 0.734
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
       0.578
ZMO1818
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3601 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
      
 0.568
ZMO1097
Thioredoxin; KEGG: eli:ELI_05075 thiol-disulfide isomerase; TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; Belongs to the thioredoxin family.
   
  
 0.509
ZMO1705
PFAM: Thioredoxin domain; KEGG: swi:Swit_3667 thioredoxin domain-containing protein.
   
  
 0.508
ZMO0070
Glutaredoxin, GrxB family; KEGG: gox:GOX1460 glutaredoxin 2; TIGRFAM: glutaredoxin, GrxB family; PFAM: Glutathione S-transferase domain; glutaredoxin 2 domain protein.
   
  
 0.493
ZMO0740
PFAM: CsbD family protein; KEGG: rpc:RPC_1353 CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
  
 0.492
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
  
 0.481
ZMO1908
PFAM: SmpA/OmlA domain protein; KEGG: swi:Swit_1931 SmpA/OmlA domain-containing protein.
   
    0.477
trmFO
Gid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily.
       0.473
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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