STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0746PFAM: protein of unknown function DUF1058; KEGG: swi:Swit_4584 hypothetical protein. (177 aa)    
Predicted Functional Partners:
ZMO1504
PFAM: protein of unknown function DUF1321; KEGG: swi:Swit_2716 hypothetical protein.
  
     0.670
ZMO1545
PFAM: heat shock protein DnaJ domain protein; KEGG: swi:Swit_2332 heat shock protein DnaJ domain-containing protein.
  
     0.670
ZMO1308
PFAM: DNA polymerase III chi subunit HolC; KEGG: sal:Sala_1760 DNA polymerase III chi subunit, HolC.
  
     0.586
ZMO0857
PFAM: protein of unknown function DUF1013; KEGG: swi:Swit_0020 hypothetical protein.
  
     0.564
ZMO1099
TIGRFAM: double-strand break repair protein AddB; KEGG: swi:Swit_2680 double-strand break repair protein AddB.
  
     0.535
ZMO0221
PFAM: transcription factor CarD; KEGG: swi:Swit_3537 CarD family transcriptional regulator.
  
     0.527
ZMO0747
KEGG: swi:Swit_1406 hypothetical protein.
       0.520
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.488
ZMO0349
PFAM: protein of unknown function DUF179; KEGG: swi:Swit_2673 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
  
     0.485
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.480
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.