STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0857PFAM: protein of unknown function DUF1013; KEGG: swi:Swit_0020 hypothetical protein. (228 aa)    
Predicted Functional Partners:
ZMO1636
PFAM: import inner membrane translocase subunit Tim44; KEGG: swi:Swit_3830 import inner membrane translocase, subunit Tim44.
  
     0.772
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
      0.744
ZMO1504
PFAM: protein of unknown function DUF1321; KEGG: swi:Swit_2716 hypothetical protein.
  
   
 0.742
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.729
lysS
TIGRFAM: lysyl-tRNA synthetase; KEGG: swi:Swit_3566 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.725
ZMO0855
PFAM: Polyprenyl synthetase; KEGG: nar:Saro_2253 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
 
     0.712
ZMO0574
PFAM: UvrD/REP helicase; KEGG: swi:Swit_1212 ATP-dependent DNA helicase UvrD.
 
      0.702
yidC
YidC translocase/secretase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.702
ZMO1668
Hypothetical protein; KEGG: swi:Swit_2548 disulfide bond formation protein DsbB-like protein.
  
     0.689
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.689
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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