STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0888PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: lpn:lpg2573 transposase (resolvase, DNA invertase). (184 aa)    
Predicted Functional Partners:
ZMO0598
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: swi:Swit_0011 phage integrase family protein; Belongs to the 'phage' integrase family.
   
  
 0.486
ZMO1194
KEGG: swi:Swit_3825 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
      
 0.471
parC
DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
      
 0.470
ZMO1185
PFAM: Uracil-DNA glycosylase superfamily; KEGG: swi:Swit_4099 uracil-DNA glycosylase superfamily protein.
      
 0.453
ZMO1401
KEGG: swi:Swit_3911 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
      
 0.453
ZMO1582
PFAM: Uracil-DNA glycosylase superfamily; KEGG: reh:H16_A2653 G:T/U mismatch-specific DNA glycosylase.
      
 0.453
ZMO1484
PFAM: UvrD/REP helicase; KEGG: scl:sce3530 ATP-dependent DNA helicase.
      
 0.452
ZMO1648
PFAM: Uracil-DNA glycosylase superfamily; KEGG: sal:Sala_1551 uracil-DNA glycosylase superfamily protein.
      
 0.452
ZMO0889
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
       0.433
ZMO0886
PFAM: protein of unknown function DUF192; KEGG: bav:BAV2093 exported protein.
       0.431
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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