STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysSTIGRFAM: lysyl-tRNA synthetase; KEGG: swi:Swit_3566 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase class 1c; Belongs to the class-I aminoacyl-tRNA synthetase family. (525 aa)    
Predicted Functional Partners:
ZMO0857
PFAM: protein of unknown function DUF1013; KEGG: swi:Swit_0020 hypothetical protein.
  
    0.725
ZMO1504
PFAM: protein of unknown function DUF1321; KEGG: swi:Swit_2716 hypothetical protein.
  
     0.623
ZMO0219
PFAM: helicase domain protein; KEGG: swi:Swit_3540 helicase domain-containing protein.
  
     0.593
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.522
ZMO0865
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
 
      0.511
ZMO1636
PFAM: import inner membrane translocase subunit Tim44; KEGG: swi:Swit_3830 import inner membrane translocase, subunit Tim44.
  
     0.497
ZMO0892
SMART: helicase c2; KEGG: swi:Swit_3565 helicase C2.
       0.489
nusG
NusG antitermination factor; Participates in transcription elongation, termination and antitermination.
   
    0.477
ZMO1543
TIGRFAM: cobalt chelatase, pCobT subunit; KEGG: swi:Swit_2329 cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase CobT subunit.
  
     0.440
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.421
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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