STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0902PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_1456 TonB-dependent receptor. (750 aa)    
Predicted Functional Partners:
ZMO0789
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1017 TonB-dependent outer membrane receptor.
  
   
 0.792
ZMO1815
KEGG: gox:GOX2077 ferric siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug.
  
  
 0.782
ZMO1298
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_1934 TonB-dependent receptor plug.
  
  
 0.778
ZMO0561
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_1934 TonB-dependent receptor plug.
  
   
 0.767
ZMO1377
KEGG: gbe:GbCGDNIH1_1586 hypothetical protein.
  
     0.767
ZMO1986
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_1934 TonB-dependent receptor plug.
  
   
 0.765
ZMO1463
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1347 TonB-dependent outer membrane receptor.
  
   
 0.755
ZMO1849
KEGG: gox:GOX0940 hypothetical protein.
  
     0.734
ZMO1458
KEGG: gox:GOX2142 hypothetical protein.
  
     0.732
ZMO0128
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1017 TonB-dependent outer membrane receptor.
  
     0.707
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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