STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0978PFAM: periplasmic binding protein; KEGG: swi:Swit_0259 periplasmic binding protein. (301 aa)    
Predicted Functional Partners:
ZMO0229
PFAM: transport system permease protein; KEGG: swi:Swit_0258 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.980
ZMO0230
ABC transporter related protein; KEGG: rce:RC1_0315 iron(III) dicitrate transport ATP-binding protein FecE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.970
ZMO1847
PFAM: transport system permease protein; KEGG: bid:Bind_2005 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.959
ZMO1846
KEGG: bid:Bind_2006 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.935
ZMO0979
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1750 TonB-dependent receptor.
 
  
 0.871
ZMO0064
PFAM: Carbohydrate-selective porin OprB; KEGG: bid:Bind_2156 carbohydrate-selective porin OprB.
      
 0.641
ZMO1040
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX0945 TonB-dependent outer membrane receptor.
  
  
 0.591
ZMO2008
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sil:SPO0100 peptide/opine/nickel uptake ABC transporter permease.
 
  
 0.581
ZMO1859
PFAM: Carbohydrate-selective porin OprB; KEGG: mpo:Mpop_1190 carbohydrate-selective porin OprB.
      
 0.568
ZMO0976
PFAM: aldo/keto reductase; KEGG: pap:PSPA7_4242 oxidoreductase.
       0.485
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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