STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO0979PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccr:CC_1750 TonB-dependent receptor. (703 aa)    
Predicted Functional Partners:
ZMO1717
KEGG: sal:Sala_0808 TonB-like protein; TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein.
   
 
 0.882
ZMO0978
PFAM: periplasmic binding protein; KEGG: swi:Swit_0259 periplasmic binding protein.
 
  
 0.871
ZMO0164
KEGG: swi:Swit_2134 hypothetical protein.
   
 
 0.842
ZMO0229
PFAM: transport system permease protein; KEGG: swi:Swit_0258 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.712
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 
 0.695
ZMO1260
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gdj:Gdia_2919 TonB-dependent receptor.
  
   
 0.688
ZMO0230
ABC transporter related protein; KEGG: rce:RC1_0315 iron(III) dicitrate transport ATP-binding protein FecE; PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.669
ZMO1062
Hypothetical protein.
   
 
 0.636
ZMO0252
TIGRFAM: major intrinsic protein; KEGG: pin:Ping_2848 hemagglutinin/hemolysin-related protein.
    
   0.596
ZMO0335
PFAM: ATPase MipZ; KEGG: swi:Swit_2789 ATPase MipZ.
    
   0.596
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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