Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ZMO1007PFAM: protein of unknown function UPF0187; KEGG: pst:PSPTO_5502 hypothetical protein. (287 aa)    
Predicted Functional Partners:
ZMO0122
Hypothetical protein.
      
 0.704
ZMO0286
PFAM: protein of unknown function DUF541; KEGG: xac:XAC2772 outer membrane protein.
      
 0.704
ZMO1563
PFAM: protein of unknown function DUF481; KEGG: swi:Swit_3855 hypothetical protein.
      
 0.704
ZMO1603
PFAM: protein of unknown function DUF442; KEGG: swi:Swit_1915 hypothetical protein.
      
 0.704
ZMO1750
KEGG: kpe:KPK_2127 hypothetical protein.
      
 0.704
ZMO1006
TIGRFAM: dihydropteroate synthase; KEGG: swi:Swit_4577 dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS.
       0.603
ZMO0994
KEGG: hypothetical protein.
      
 0.544
ZMO1005
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: swi:Swit_4576 DNA methylase N-4/N-6 domain-containing protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.500
ZMO1008
PFAM: FAD linked oxidase domain protein; KEGG: swi:Swit_0138 FAD linked oxidase domain-containing protein.
       0.497
ZMO1010
KEGG: pde:Pden_4689 hypothetical protein.
 
     0.423
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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