STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1063KEGG: swi:Swit_2937 phage shock protein A, PspA; TIGRFAM: phage shock protein A; PFAM: PspA/IM30 family protein. (222 aa)    
Predicted Functional Partners:
ZMO1065
KEGG: sal:Sala_0209 phage shock protein C, PspC; TIGRFAM: phage shock protein C; PFAM: PspC domain protein.
 
 
 0.999
ZMO1064
TIGRFAM: phage shock protein B; KEGG: swi:Swit_2938 phage shock B family protein.
     
 0.913
ZMO1062
Hypothetical protein.
     
 0.884
ZMO1061
Sigma54 specific transcriptional acivator, PspF, Fis family; TIGRFAM: psp operon transcriptional activator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; KEGG: swi:Swit_2936 sigma-54 dependent trancsriptional regulator; SMART: AAA ATPase.
 
   
 0.862
ZMO1807
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: gox:GOX1075 TonB-dependent outer membrane receptor.
      
 0.549
ZMO1405
PFAM: response regulator receiver; KEGG: swi:Swit_3925 two-component response regulator.
   
 
 0.522
ZMO0631
Sigma54 specific transcriptional regulator, Fis family; KEGG: swi:Swit_1285 sigma-54 dependent trancsriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
    
 
 0.489
ZMO1387
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: eli:ELI_14230 DNA-binding response regulator CtrA.
   
  
 0.459
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
      
 0.457
ZMO1121
PFAM: regulatory protein MerR; KEGG: swi:Swit_3558 MerR family transcriptional regulator.
      
 0.457
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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