STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1114Phage SPO1 DNA polymerase-related protein; KEGG: atc:AGR_C_3961 putative DNA polymerase bacteriophage-type; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily. (206 aa)    
Predicted Functional Partners:
ZMO1185
PFAM: Uracil-DNA glycosylase superfamily; KEGG: swi:Swit_4099 uracil-DNA glycosylase superfamily protein.
  
  
  0.974
ZMO1648
PFAM: Uracil-DNA glycosylase superfamily; KEGG: sal:Sala_1551 uracil-DNA glycosylase superfamily protein.
     
 0.901
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.626
ZMO1113
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mmw:Mmwyl1_2257 NADH dehydrogenase.
       0.497
ZMO1542
KEGG: sit:TM1040_1425 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
    
   0.477
ZMO0613
KEGG: swi:Swit_1270 flagellar basal-body rod protein FlgC; TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; Belongs to the flagella basal body rod proteins family.
    
   0.422
ZMO1414
PFAM: peptidase M22 glycoprotease; KEGG: swi:Swit_2382 peptidase M22, glycoprotease.
  
    0.412
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily.
      
 0.404
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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