Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ZMO1306Hemolysin A; KEGG: swi:Swit_4468 hemolysin A; TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ. (249 aa)    
Predicted Functional Partners:
ZMO1866
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: swi:Swit_3001 beta-lactamase domain-containing protein.
 
   
 0.642
ZMO1305
PFAM: protein of unknown function DUF526; KEGG: swi:Swit_4470 hypothetical protein.
       0.574
ZMO0079
PFAM: response regulator receiver; KEGG: cak:Caul_0278 response regulator receiver protein.
    
 
 0.563
ZMO1914
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: swi:Swit_0222 phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.559
ZMO0108
PFAM: small multidrug resistance protein; KEGG: bwe:BcerKBAB4_0308 small multidrug resistance protein.
     
 0.549
ZMO1094
PFAM: beta-lactamase domain protein; KEGG: swi:Swit_0488 beta-lactamase domain-containing protein.
     
 0.548
ZMO0111
KEGG: swi:Swit_3446 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
      
 0.547
ZMO0675
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: swi:Swit_1196 LysR family transcriptional regulator.
      
 0.547
ZMO1164
KEGG: swi:Swit_3577 two component transcriptional regulator; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein.
      
 0.547
ZMO1177
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: gbe:GbCGDNIH1_1900 two-component response regulator.
      
 0.547
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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