STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1402KEGG: eli:ELI_12945 hypothetical protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family. (115 aa)    
Predicted Functional Partners:
ZMO1401
KEGG: swi:Swit_3911 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
       0.831
ZMO1403
PFAM: Peptidase M23; KEGG: swi:Swit_3913 peptidase M23B.
       0.667
ZMO0591
KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation.
  
  
 0.563
ZMO1873
KEGG: eli:ELI_03280 glutaredoxin-related protein; TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; Belongs to the glutaredoxin family. Monothiol subfamily.
 
 0.547
ZMO1831
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
  
  
 0.531
ZMO1817
KEGG: gdj:Gdia_1576 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; Radical SAM domain protein.
  
  
 0.493
ZMO0859
PFAM: aminotransferase class V; KEGG: swi:Swit_0052 aminotransferase, class V.
  
  
 0.469
ZMO1022
KEGG: swi:Swit_0051 cysteine desulfurase; PFAM: aminotransferase class V.
  
  
 0.469
ZMO1834
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.469
ZMO1415
Scaffold protein Nfu/NifU; PFAM: nitrogen-fixing NifU domain protein; Scaffold protein Nfu/NifU; KEGG: swi:Swit_2380 scaffold protein Nfu/NifU-like protein.
  
 
 0.466
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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