STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1504PFAM: protein of unknown function DUF1321; KEGG: swi:Swit_2716 hypothetical protein. (163 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.770
ZMO0857
PFAM: protein of unknown function DUF1013; KEGG: swi:Swit_0020 hypothetical protein.
  
   
 0.742
ZMO1099
TIGRFAM: double-strand break repair protein AddB; KEGG: swi:Swit_2680 double-strand break repair protein AddB.
  
     0.738
ZMO1308
PFAM: DNA polymerase III chi subunit HolC; KEGG: sal:Sala_1760 DNA polymerase III chi subunit, HolC.
  
     0.733
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.680
hisB
KEGG: nar:Saro_1006 imidazoleglycerol-phosphate dehydratase; PFAM: imidazoleglycerol-phosphate dehydratase.
       0.680
ZMO0746
PFAM: protein of unknown function DUF1058; KEGG: swi:Swit_4584 hypothetical protein.
  
     0.670
ZMO1908
PFAM: SmpA/OmlA domain protein; KEGG: swi:Swit_1931 SmpA/OmlA domain-containing protein.
  
   
 0.661
ZMO1098
KEGG: swi:Swit_2681 double-strand break repair helicase AddA; TIGRFAM: double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
  
     0.653
ZMO1304
PFAM: Protein of unknown function DUF1790; KEGG: swi:Swit_4471 hypothetical protein.
  
     0.636
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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