STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1641KEGG: swi:Swit_2339 hypothetical protein. (220 aa)    
Predicted Functional Partners:
ZMO0228
PFAM: polysaccharide biosynthesis protein; KEGG: swi:Swit_0449 polysaccharide biosynthesis protein.
  
     0.770
ZMO1319
Hypothetical protein; KEGG: swi:Swit_0407 TPR repeat-containing protein.
  
     0.759
ZMO1012
KEGG: swi:Swit_4112 hypothetical protein.
  
     0.737
ZMO1393
PFAM: permease YjgP/YjgQ family protein; KEGG: swi:Swit_3905 permease YjgP/YjgQ family protein.
  
     0.690
ZMO0277
PFAM: protein of unknown function DUF1239; KEGG: swi:Swit_2904 hypothetical protein.
  
     0.663
ZMO1394
PFAM: permease YjgP/YjgQ family protein; KEGG: swi:Swit_3906 permease YjgP/YjgQ family protein.
  
     0.627
ZMO1391
PFAM: diacylglycerol kinase catalytic region; KEGG: swi:Swit_3903 diacylglycerol kinase, catalytic region.
  
     0.611
ZMO1959
Hypothetical protein; KEGG: eli:ELI_06575 ATPase.
  
     0.601
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.591
ZMO1434
Hypothetical protein; KEGG: swi:Swit_2851 secreted (periplasmic)-like protein.
  
     0.580
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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