STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1648PFAM: Uracil-DNA glycosylase superfamily; KEGG: sal:Sala_1551 uracil-DNA glycosylase superfamily protein. (212 aa)    
Predicted Functional Partners:
ZMO1185
PFAM: Uracil-DNA glycosylase superfamily; KEGG: swi:Swit_4099 uracil-DNA glycosylase superfamily protein.
     
 0.943
ZMO1114
Phage SPO1 DNA polymerase-related protein; KEGG: atc:AGR_C_3961 putative DNA polymerase bacteriophage-type; TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily.
     
 0.901
ZMO1647
KEGG: swi:Swit_1215 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK.
     
 0.589
ZMO1194
KEGG: swi:Swit_3825 DNA protecting protein DprA; TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein.
   
 
 0.493
ZMO1484
PFAM: UvrD/REP helicase; KEGG: scl:sce3530 ATP-dependent DNA helicase.
   
  
 0.481
ZMO1542
KEGG: sit:TM1040_1425 single-strand binding protein; TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n.
    
   0.477
ZMO1582
PFAM: Uracil-DNA glycosylase superfamily; KEGG: reh:H16_A2653 G:T/U mismatch-specific DNA glycosylase.
      
 0.465
ZMO1401
KEGG: swi:Swit_3911 exodeoxyribonuclease III; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase.
  
  
 0.462
ZMO0888
PFAM: Resolvase domain; Resolvase helix-turn-helix domain protein; KEGG: lpn:lpg2573 transposase (resolvase, DNA invertase).
      
 0.452
ZMO0598
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: swi:Swit_0011 phage integrase family protein; Belongs to the 'phage' integrase family.
      
 0.451
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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