STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1657KEGG: swi:Swit_4507 hypothetical protein. (356 aa)    
Predicted Functional Partners:
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.894
ZMO1433
KEGG: swi:Swit_2850 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta.
 
     0.742
ZMO1665
PFAM: Peptidase M23; KEGG: sal:Sala_0575 peptidase M23B.
 
     0.729
ZMO1909
PFAM: protein of unknown function DUF177; KEGG: swi:Swit_1929 hypothetical protein.
  
    0.726
ZMO1959
Hypothetical protein; KEGG: eli:ELI_06575 ATPase.
  
   
 0.726
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
       0.710
ZMO0752
KEGG: swi:Swit_0063 hypothetical protein.
  
     0.688
ZMO0277
PFAM: protein of unknown function DUF1239; KEGG: swi:Swit_2904 hypothetical protein.
  
     0.671
ZMO1760
PFAM: Extracellular ligand-binding receptor; KEGG: swi:Swit_0570 ABC-type branched-chain amino acid transport systems periplasmic component-like protein.
  
     0.643
ZMO1607
PFAM: Septum formation initiator; KEGG: swi:Swit_1221 septum formation initiator.
  
     0.609
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.