STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1680PFAM: Extensin family protein; KEGG: swi:Swit_0871 extensin family protein. (220 aa)    
Predicted Functional Partners:
ZMO1679
PFAM: conserved hypothetical protein; KEGG: sal:Sala_0619 hypothetical protein.
       0.737
ZMO0591
KEGG: swi:Swit_0002 NifU-like involved in Fe-S cluster formation.
  
     0.655
ZMO1678
KEGG: swi:Swit_4688 prephenate dehydratase; PFAM: prephenate dehydratase.
       0.639
ZMO1743
Bis(5'nucleosyl)-tetraphosphatase, ApaH; PFAM: metallophosphoesterase; KEGG: swi:Swit_3967 metallophosphoesterase.
  
     0.543
ZMO1729
KEGG: sal:Sala_0529 hypothetical protein.
  
     0.542
ZMO1869
KEGG: eli:ELI_12675 ribonuclease T2 family protein; Belongs to the RNase T2 family.
  
     0.538
ZMO0298
KEGG: sal:Sala_3103 hypothetical protein.
  
     0.493
ZMO1875
PFAM: protein of unknown function DUF1476; KEGG: sal:Sala_0355 hypothetical protein.
  
     0.489
yacG
Hypothetical protein; Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C- terminal domain of GyrB, which probably disrupts DNA binding by the gyrase.
  
     0.440
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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