STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1702PFAM: cell divisionFtsK/SpoIIIE; KEGG: swi:Swit_3663 DNA translocase FtsK. (785 aa)    
Predicted Functional Partners:
ZMO0252
TIGRFAM: major intrinsic protein; KEGG: pin:Ping_2848 hemagglutinin/hemolysin-related protein.
    
 
 0.866
ftsQ
Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.792
ZMO1978
parB-like partition protein; KEGG: swi:Swit_2849 chromosome segregation DNA-binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; Belongs to the ParB family.
  
   
 0.742
ZMO1866
PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; KEGG: swi:Swit_3001 beta-lactamase domain-containing protein.
 
    0.696
ZMO1701
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
  
 0.684
ZMO0121
AAA ATPase central domain protein; KEGG: swi:Swit_0882 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase.
 
    0.653
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids (By similarity).
  
  
 0.627
ZMO1703
KEGG: swi:Swit_3664 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase FAD-binding.
     
 0.624
ZMO1107
PFAM: regulatory protein AsnC/Lrp family; KEGG: swi:Swit_4567 AsnC family transcriptional regulator.
      0.620
ZMO1149
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; KEGG: swi:Swit_0467 putative membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.
 
    0.584
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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