STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1833PFAM: nitrogen-fixing NifU domain protein; KEGG: gdj:Gdia_1559 Fe-S cluster assembly protein NifU. (80 aa)    
Predicted Functional Partners:
ZMO1831
PFAM: NifQ family protein; KEGG: gdj:Gdia_1561 NifQ family protein.
 
 
 0.902
ZMO1834
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
 
 
 0.895
ZMO1832
KEGG: gdj:Gdia_1560 iron-sulfur cluster assembly accessory protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
 
 
 0.802
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.729
ZMO1829
Nitrogen fixation protein; KEGG: rec:RHECIAT_PB0000342 hypothetical protein; TIGRFAM: nitrogen fixation protein; PFAM: protein of unknown function DUF269.
 
    0.610
ZMO2028
Ferredoxin III, nif-specific; KEGG: bbt:BBta_5917 ferredoxin-3 (ferredoxin III) (FdIII); TIGRFAM: ferredoxin III, nif-specific; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
     0.575
ZMO1835
KEGG: gdj:Gdia_1557 homocitrate synthase; TIGRFAM: homocitrate synthase; PFAM: pyruvate carboxyltransferase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
     
 0.566
ZMO1818
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: met:M446_3601 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
   
  
 0.564
ZMO1821
KEGG: gdi:GDI0435 hypothetical protein.
  
     0.543
ZMO1022
KEGG: swi:Swit_0051 cysteine desulfurase; PFAM: aminotransferase class V.
 
 
 0.509
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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