STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZMO1886KEGG: bid:Bind_2181 membrane protein AbrB duplication; TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase. (369 aa)    
Predicted Functional Partners:
ZMO1887
PFAM: isochorismatase hydrolase; KEGG: bid:Bind_2180 isochorismatase hydrolase.
 
     0.802
ZMO0566
PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_5058 major facilitator transporter.
  
   
 0.751
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
      
 0.720
ZMO0143
KEGG: swi:Swit_1926 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
      
 0.574
ZMO0169
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: xau:Xaut_1054 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.524
ZMO0133
PFAM: Sel1 domain protein repeat-containing protein; KEGG: aas:Aasi_0854 hypothetical protein.
      
 0.459
ZMO0134
PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1656 TPR repeat protein, SEL1 subfamily.
      
 0.459
ZMO0135
PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1656 TPR repeat protein, SEL1 subfamily.
      
 0.459
ZMO0136
PFAM: Sel1 domain protein repeat-containing protein; KEGG: min:Minf_1697 TPR repeat protein, SEL1 subfamily.
      
 0.459
ZMO2012
KEGG: swi:Swit_3899 hypothetical protein.
      
 0.459
Your Current Organism:
Zymomonas mobilis ZM4
NCBI taxonomy Id: 264203
Other names: Z. mobilis subsp. mobilis ZM4 = ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821, Zymomonas mobilis subsp. mobilis ATCC 31821 = ZM4, Zymomonas mobilis subsp. mobilis ZM4, Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
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