STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_00640PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)    
Predicted Functional Partners:
FB00_00635
Inositol-3-phosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.896
FB00_00625
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.677
FB00_19660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.566
FB00_06220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
FB00_06215
Dynein regulation protein LC7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
FB00_07120
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.518
FB00_20835
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
FB00_09575
Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GlnD family.
  
     0.448
FB00_19650
Lipid A biosynthesis acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.426
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.