STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_036151,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)    
Predicted Functional Partners:
FB00_04360
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.912
FB00_19110
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
 0.868
FB00_04355
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.852
FB00_19215
Exoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.817
FB00_03140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.812
FB00_19200
Exoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
   
 0.794
FB00_00365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.784
FB00_04370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.783
FB00_03645
Xylan 1,4-beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.774
FB00_03690
Alpha-glucuronidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.761
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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