STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_06105TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
FB00_15300
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
FB00_06110
Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.532
FB00_17030
Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.511
FB00_06095
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.501
FB00_06100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.486
FB00_08440
Universal stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.439
FB00_09685
Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.425
FB00_11455
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.418
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.