STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_07345Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (861 aa)    
Predicted Functional Partners:
FB00_19140
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.884
FB00_07350
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
0.847
FB00_00195
Glycoside hydrolase family 18; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
 0.844
FB00_02100
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.810
FB00_15665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
 
0.784
FB00_08050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
  
 
 
0.766
FB00_00630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
  
 
 
0.765
FB00_16530
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.710
FB00_06560
N-acetyl-beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.690
FB00_01955
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.688
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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