STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_08600Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)    
Predicted Functional Partners:
FB00_08605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.657
FB00_11770
Phosphate acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.636
FB00_11660
Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.612
FB00_13330
L-lysine 6-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.566
FB00_02440
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.512
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
    0.481
FB00_08595
N,N'-diacetylchitobiose phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
FB00_10580
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.479
FB00_13325
Siderophore synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.477
FB00_11145
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.444
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.