STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_10700Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M50B family. (392 aa)    
Predicted Functional Partners:
FB00_10695
SAM-dependent methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
      0.845
FB00_02955
Phosphofructokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.738
FB00_14985
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.690
FB00_13075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.689
FB00_10745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
arc
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.583
FB00_10680
Pup deamidase/depupylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.549
FB00_10675
Ubiquitin; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.
 
     0.545
FB00_18645
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.543
FB00_10705
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.505
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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