STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FB00_18745Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)    
Predicted Functional Partners:
FB00_18750
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
FB00_18755
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.639
FB00_18740
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.592
FB00_17195
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.514
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
  
  0.504
FB00_11655
Peptidase M22; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.449
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.434
FB00_18735
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.426
FB00_08295
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.415
Your Current Organism:
Cellulosimicrobium funkei
NCBI taxonomy Id: 264251
Other names: ATCC BAA-886, C. funkei, CCUG 50705, Cellulosimicrobium funkei Brown et al. 2006, Cellulosimicrobium sp. AR6, Cellulosimicrobium sp. AR8, DSM 16025, JCM 14302, NBRC 104118, NCTC 13516, strain W6122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.