STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd0340InterPro: GDSL lipolytic enzyme, Lipase/ acylhydrolase domain protein, Acyl-CoA thioesterase; hypothetical protein. (199 aa)    
Predicted Functional Partners:
Bd0342
ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component; hypothetical protein.
 
     0.958
Bd0341
ABC-type transporter, ATP-binding protein; Biosynthesis, ATP binding component, ABC-type transport system involved in lysophospholipase L1; hypothetical protein.
 
     0.884
Bd0344
Putative translation factor related to Sua5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.705
rbp-2
InterPro: RNA-binding region RNP-1 (RNA recognition motif); hypothetical protein.
       0.578
Bd0672
Hypothetical protein predicted by Glimmer/Critica; CDS.
  
 
 0.562
Bd1836
InterPro: 3-hydroxyacyl-CoA dehydrogenase, fatty oxidation complex, alpha subunit [EC:1.1.1.35 4.2.1.17 5.1.2.3]; hypothetical protein; Belongs to the enoyl-CoA hydratase/isomerase family.
   
  
 0.421
Bd0037
Putative oxidoreductase; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.418
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.