STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd0342ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component; hypothetical protein. (849 aa)    
Predicted Functional Partners:
Bd0340
InterPro: GDSL lipolytic enzyme, Lipase/ acylhydrolase domain protein, Acyl-CoA thioesterase; hypothetical protein.
 
     0.958
Bd0341
ABC-type transporter, ATP-binding protein; Biosynthesis, ATP binding component, ABC-type transport system involved in lysophospholipase L1; hypothetical protein.
 
  
 0.910
macB
Macrolide specific ABC-type transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
  
 0.725
Bd0344
Putative translation factor related to Sua5; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.
       0.705
rbp-2
InterPro: RNA-binding region RNP-1 (RNA recognition motif); hypothetical protein.
       0.578
Bd1111
ABC-type antimicrobial peptide transport system, ATPase component; hypothetical protein.
 
  
 0.419
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.