STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd0857Hypothetical protein predicted by Glimmer/Critica. (222 aa)    
Predicted Functional Partners:
pyrB
InterPro: Aspartate and ornithine carbamoyltransferase family, catalytic chain; hypothetical protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
       0.802
carA
Carbamoyl-phosphate synthetase glutamine chain; hypothetical protein; Belongs to the CarA family.
       0.802
carB
InterPro: Carbamoyl-phosphate synthase, large chain; hypothetical protein; Belongs to the CarB family.
       0.758
phoD
Alkylphosphonate ABC tranporter; InterPro: Bacterial extracellular solute-binding proteins family 3, Phosphonates-binding periplasmic protein precursor; hypothetical protein.
       0.756
phnC
Phosphonates transport ATP-binding protein; hypothetical protein.
       0.756
pilD
Leader peptidase (prepilin peptidase); Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
       0.756
pilI
Type IV pilus biogenesis protein PilI homolog ABC-type transport system involved in multi-copper enzyme maturation, permease component; hypothetical protein.
       0.736
lepB-3
InterPro: Signal peptidase, leader peptidase (signal peptidase I), serine protease; hypothetical protein; Belongs to the peptidase S26 family.
       0.660
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.574
lepB-2
InterPro: Signal peptidase, leader peptidase (signal peptidase I), serine protease; hypothetical protein; Belongs to the peptidase S26 family.
       0.499
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.