STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1183Hypothetical protein predicted by Glimmer/Critica. (339 aa)    
Predicted Functional Partners:
ycbB
Putative periplasmic protein YcbB.
      0.821
Bd1184
Conserved hypothetical protein.
       0.746
Bd1179
Hypothetical protein predicted by Glimmer/Critica.
       0.497
Bd1180
Hypothetical protein predicted by Glimmer/Critica; Possible ATPases with chaperone activity, ATP-binding subunit; hypothetical protein.
       0.497
Bd1185
Hypothetical protein predicted by Glimmer/Critica.
       0.464
Bd1186
Unnamed protein product; InterPro: 5-formyltetrahydrofolate cyclo-ligase; hypothetical protein.
       0.431
rny1
Putative HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.431
tyrS
Tyrosine--tRNA ligase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.
       0.431
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.