STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1236Probable DNA-binding stress protein; InterPro: Dps protein family; hypothetical protein; Belongs to the Dps family. (167 aa)    
Predicted Functional Partners:
clpS
Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.747
Bd2628
Rieske domain-containing protein; Unnamed protein product; Uncharacterized NAD(FAD)-dependent dehydrogenases; hypothetical protein.
  
  
 0.655
ahpC
Alkyl hydroperoxide reductase, C22 subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.617
Bd3525
Tryparedoxin peroxidase; hypothetical protein.
  
  
 0.617
PSrp-1
Ribosome-associated protein Y; InterPro: Sigma 54 modulation protein / S30EA ribosomal protein; hypothetical protein.
  
    0.616
prkA
prkA; serine protein kinase; hypothetical protein.
   
    0.589
Bd0909
Predicted redox protein, regulator of disulfide bond formation; hypothetical protein.
  
  
 0.551
Bd1436
Osmotically inducible protein; Region start changed from 1354260 to 1354188 (-72 bases).
  
  
 0.551
Bd2473
Putative signal peptide protein containing LysM motif; InterPro: LysM motif; hypothetical protein.
   
  
 0.523
ahpF
Alkyl hydroperoxide reductase, subunit F; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein.
  
  
 0.502
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
Server load: low (20%) [HD]