STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1305Predicted permeases (COG0730); hypothetical protein. (259 aa)    
Predicted Functional Partners:
Bd1303
Predicted transporter component; hypothetical protein.
    
 0.845
Bd1302
Putative molybdopterin biosynthesis protein; Rhodanese related sulfurtransferase; hypothetical protein.
 
  
 0.814
Bd1304
Conserved hypothetical protein; Predicted transmembrane protein with a transporter component; hypothetical protein.
     
 0.786
Bd1301
Metallo-beta-lactamase superfamily protein; Probable Zn-dependent hydrolases including glyoxylases; hypothetical protein.
 
     0.640
nifR
Nitrogen regulation protein nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
       0.574
acs
Acetyl coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
    0.572
pheT
InterPro: Phenylalanyl-tRNA synthetase beta subunit bacterial/chloroplast; hypothetical protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.570
Bd1307
Hypothetical protein; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
       0.561
fecB
ABC-type Fe3+-siderophores transport systems.
 
   
 0.496
Bd2053
Periplasmic component of the Tol biopolymer transport system; hypothetical protein.
 
 
 
 0.460
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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