STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1451InterPro: Bacterial regulatory protein MarR family; hypothetical protein. (327 aa)    
Predicted Functional Partners:
Bd1452
Putative Phenylacetic acid degradation protein PAAI; InterPro: DUF157; hypothetical protein.
       0.780
pobR
Putative transcriptional regulator; InterPro: AraC type helix-turn-helix,; hypothetical protein.
 
  
 0.693
glnA
InterPro: Glutamine synthetase type I; hypothetical protein.
     
 0.601
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
  
 0.595
kamA
Lysine 2,3-aminomutase; InterPro: DUF160; hypothetical protein.
  
  
 0.570
Bd1544
Putative peptide N-acetyltransferase; InterPro: GCN5-related N-acetyltransferase; hypothetical protein.
     
 0.560
Bd3662
Putative calcineurin superfamily phosphohydrolase; hypothetical protein.
 
   
 0.546
Bd2664
InterPro: NADH:flavin oxidoreductase/NADH oxidase, FMN oxidoreductase,; hypothetical protein.
 
  
 0.545
gapdh
Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase; hypothetical protein.
   
 
 0.535
dapB
4-hydroxy-tetrahydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
     
 0.529
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.