STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aroEAroE protein; Shikimate 5-dehydrogenase. (277 aa)    
Predicted Functional Partners:
ribC
Riboflavin kinase / FAD synthase ribC; Belongs to the ribF family.
       0.786
pilB
Type IV pilus biogenesis protein PilB.
       0.620
pilT
pilT; twitching motility protein PilT.
       0.620
pilC
pilC; InterPro: Bacterial type II secretion system protein; hypothetical protein.
       0.620
pilS
pilS sensor protein; InterPro: Histidine kinase C-terminal; hypothetical protein.
       0.620
atoC
Acetoacetate metabolism regulatory protein atoC.
       0.554
Bd1506
Sensory transduction histidine kinases; InterPro: Histidine kinase C-terminal; hypothetical protein.
       0.554
pilR
Regulator protein pilR; InterPro: Sigma-54 factor interaction domain; hypothetical protein.
       0.523
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.