STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1593Hypothetical protein predicted by Glimmer/Critica. (364 aa)    
Predicted Functional Partners:
Bd1592
Hypothetical protein predicted by Glimmer/Critica.
       0.773
Bd1594
Hypothetical protein predicted by Glimmer/Critica; Similar to exonuclease III; hypothetical protein.
       0.773
Bd1588
Putative type II secretory pathway, component PulJ; hypothetical protein.
  
    0.426
Bd1589
Putative general secretion pathway protein I.
  
    0.426
Bd1590
Hypothetical protein predicted by Glimmer/Critica.
  
    0.426
Bd1591
Type II secretory pathway, pseudopilin PulG; hypothetical protein.
  
    0.426
Bd1587
Type II secretory pathway, component PulK; hypothetical protein.
       0.412
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.