STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mvkMvk protein; Mevalonate kinase. (295 aa)    
Predicted Functional Partners:
Bd1627
Unnamed protein product; InterPro: Hydroxymethylglutaryl-CoA reductase degradative; hypothetical protein; Belongs to the HMG-CoA reductase family.
 
 0.996
Bd1629
Diphosphomevalonate decarboxylase.
 
  
 0.989
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
 
   
 0.959
Bd1628
Hypothetical protein predicted by Glimmer/Critica.
       0.802
Bd1631
Conserved hypothetical protein; Similar to DNA alkylation repair enzyme; hypothetical protein.
       0.686
Bd0601
Putative ribosephosphate isomerase.
  
     0.645
rplT
50S ribosomal chain protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
    0.643
Bd3551
Conserved hypothetical protein; Cytosolic IMP-GMP specific 5-nucleotidase, putative; hypothetical protein.
  
     0.550
rpmI
50S ribosomal protein L35; CDS; Belongs to the bacterial ribosomal protein bL35 family.
       0.480
osc
Conserved hypothetical protein; Possible Lanosterol synthase (Oxidosqualene--lanosterol cyclase)(2,3-epoxysqualene--lanosterol cyclase) (OSC); hypothetical protein.
   
  
 0.460
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.