STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
capMCapsular polysaccharide synthesis enzyme Cap8M. (187 aa)    
Predicted Functional Partners:
Bd1697
UDP-N-acetyl-D-quinovosamine 4-epimerase.
  
 0.987
Bd1696
Putative glycosyltransferase.
 
  
 0.950
manC
Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase(MANC), InterPro: Mannose-6-phosphate isomerase type II; hypothetical protein.
  
  
 0.943
Bd1684
InterPro: Bacterial transferase hexapeptide repeat; hypothetical protein.
      0.910
wbpM
Nucleotide sugar epimerase/dehydratase; InterPro: Polysaccharide biosynthesis protein CapD type; hypothetical protein.
  
 0.904
capF
Capsular polysaccharide synthesis enzyme Cap5F.
  
  
 0.775
Bd1688
InterPro: Polysaccharide biosynthesis protein; hypothetical protein.
  
  
 0.758
Bd1674
Putative O-antigen ligase WaaL.
  
  
 0.757
mrp
Mrp protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
  
 0.729
capE
Capsular polysaccharide synthesis enzyme Cap8E; InterPro: Polysaccharide biosynthesis protein CapD type; hypothetical protein.
 
  
 0.721
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.