STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd1934Putative endonuclease. (215 aa)    
Predicted Functional Partners:
Bd1431
InterPro: Staphylococcus nuclease (SNase) homologues; hypothetical protein.
  
   
 0.796
endA
Putative secreted nuclease; Endonuclease I; hypothetical protein.
     
 0.766
Bd1244
Unnamed protein product; COG2356 Endonuclease I; hypothetical protein.
     
 0.766
Bd3507
Putative secreted ribonuclease; hypothetical protein.
     
 0.766
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.711
Bd1501
Hypothetical protein predicted by Glimmer/Critica.
   
  
 0.659
Bd0943
Putative amidohydrolase; InterPro: Carbon-nitrogen hydrolase, Nitrilase 1 like protein; hypothetical protein.
      
 0.627
dnaK
Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.627
Bd1937
Hypothetical protein predicted by Glimmer/Critica.
       0.564
Bd1935
Hypothetical protein predicted by Glimmer/Critica.
       0.542
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.