STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bsaA-2InterPro: Glutathione peroxidase; hypothetical protein. (218 aa)    
Predicted Functional Partners:
gst
InterPro: Glutathione S-transferase N terminus; hypothetical protein.
   
 
 0.912
ggt
Ggt protein; InterPro: Gamma-glutamyltranspeptidase; hypothetical protein.
     
 0.912
gst-2
Gst protein; InterPro: Glutathione S-transferase C terminus; hypothetical protein; Belongs to the GST superfamily.
   
 
 0.912
btuE
Vitamin B12-bindingperiplasmic protein of vitamin B12 ABC transporter; hypothetical protein; Belongs to the glutathione peroxidase family.
  
  
 
0.910
bsaA
InterPro: Glutathione peroxidase; hypothetical protein.
  
  
 
0.910
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
      
 0.790
ybbB
Rhodanese; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain.
      
 0.768
serS
Serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
      
 0.641
Bd1948
Hypothetical protein predicted by Glimmer/Critica.
       0.554
purB
InterPro: Adenylosuccinate lyase; hypothetical protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
       0.535
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.