STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacADacA protein; InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; hypothetical protein. (286 aa)    
Predicted Functional Partners:
dacB
D-Ala-D-Ala carboxypeptidase 3 (S13) family; dacB; D-alanyl-D-alanine carboxypeptidase; hypothetical protein.
     
 0.925
mrcA
Penicillin-binding protein 1A; InterPro: Penicillin binding protein transpeptidase domain, ponA, penicillin-binding protein 1A [EC: 3.4.-.-]; hypothetical protein.
     
 0.924
Bd2460
InterPro: Penicillin binding protein transpeptidase domain, COG0768 Cell division protein FtsI/penicillin-binding protein 2; hypothetical protein.
 
  
 0.789
thrB
Homoserine kinase.
       0.752
Bd2046
Conserved hypothetical protein; Large exoproteins involved in heme utilization or adhesion.
       0.656
leuS-2
leucyl-rRNA synthetase; Region start changed from 344106 to 344217 (111 bases); Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.638
mreB
InterPro: Cell shape determining protein MreB/Mrl; hypothetical protein.
 
  
 0.480
ftsK
InterPro: FtsK/SpoIIIE family; hypothetical protein.
 
   
 0.479
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.472
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
 
   
 0.469
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.