STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadHABC transporter integral membrane protein. (257 aa)    
Predicted Functional Partners:
yadG
Putative ATP-binding component of a transport system; InterPro: AAA ATPase superfamily; hypothetical protein.
  
 0.977
nodJ
ABC transporter, permease protein; Nodulation protein J, NodJ membrane transport protein; hypothetical protein.
  
  
  0.829
nodI
NodI membrane transport protein, Nod factor export ATP-binding protein I, probable Daunorubicin resistance ATP-binding protein; hypothetical protein.
  
 0.797
prfC
Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.
       0.783
Bd2127
Hypothetical protein.
       0.773
yvfR
ABC transporter, ATP-binding protein; InterPro: AAA ATPase superfamily; hypothetical protein.
  
 0.595
Bd0135
Unnamed protein product; InterPro: Nitroreductase family; hypothetical protein.
  
    0.556
Bd1162
Unnamed protein product; InterPro: Nitroreductase family, Major NAD(P)H-flavin oxidoreductase (FRASE I); hypothetical protein.
  
    0.556
Bd2149
InterPro: Nitroreductase family; hypothetical protein.
  
    0.556
Bd1877
ABC transporter multidrug ATP-binding protein; InterPro: AAA ATPase superfamily; hypothetical protein.
 
  
 0.442
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.