STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldHInterPro: Aldehyde dehydrogenase family; hypothetical protein. (467 aa)    
Predicted Functional Partners:
Bd0504
acetyl-CoA synthetase; AMP-binding protein; hypothetical protein.
  
 0.942
acs
Acetyl coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.942
Bd1836
InterPro: 3-hydroxyacyl-CoA dehydrogenase, fatty oxidation complex, alpha subunit [EC:1.1.1.35 4.2.1.17 5.1.2.3]; hypothetical protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.934
putA
1-pyrroline-5 carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
 
0.928
mmsA
Methylmalonate-semialdehyde dehydrogenase.
  
  
 
0.927
adhC
InterPro: Zinc-containing alcohol dehydrogenase superfamily, Probable alcohol dehydrogenase class III (EC 1.1.1.1) (Glutathione-dependent formaldehyde dehydrogenase) (FDH) (FALDH); hypothetical protein; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.
  
 0.926
Bd2197
Alkane 1-monooxygenase.
  
  
 0.923
adhA
InterPro: Zinc-containing alcohol dehydrogenase superfamily; hypothetical protein.
  
 
 0.911
Bd1620
acetyl-CoA hydrolase/transferase family protein; Region start changed from 1552387 to 1552363 (-24 bases).
  
 
 0.911
adh
InterPro: Zinc-containing alcohol dehydrogenase superfamily, adh-5; Alcohol dehydrogenase (Zn containing) [EC:1.1.1.1],; hypothetical protein.
  
 
 0.911
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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