STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepNPepN protein; InterPro: Aminopeptidase N APN (CD13); hypothetical protein. (873 aa)    
Predicted Functional Partners:
pepA
InterPro: Cytosol aminopeptidase; hypothetical protein.
   
 0.921
pepA-2
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
   
 0.921
gshA
Putative glutamate--cysteine ligase; hypothetical protein.
   
 
  0.909
ggt
Ggt protein; InterPro: Gamma-glutamyltranspeptidase; hypothetical protein.
     
 0.905
Bd1350
Conserved hypothetical protein.
     
  0.900
Bd2263
Conserved hypothetical protein; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.
     
  0.900
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.839
Bd1710
PALP domain-containing protein; Unnamed protein product; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; hypothetical protein.
   
 0.822
cysM
CysM protein; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; hypothetical protein.
   
 0.811
aspC
Aspartate aminotransferase.
  
 
 0.810
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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