STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd2617Transcription regulator. (107 aa)    
Predicted Functional Partners:
ompA-2
InterPro: Bacterial outer membrane protein; hypothetical protein.
       0.762
Bd2609
Cation transport ATPase, E1-E2 family; InterPro: Haloacid dehalogenase/epoxide hydrolase family; hypothetical protein.
       0.452
ccoS
InterPro: Cytochrome oxidase maturation protein cbb3-type; hypothetical protein.
       0.452
fixN
InterPro: Cytochrome c oxidase cbb3-type subunit I; hypothetical protein; Belongs to the heme-copper respiratory oxidase family.
       0.452
Bd2612
Hypothetical protein predicted by Glimmer/Critica.
       0.452
fixP
Cytochrome-c oxidase fixP chain; InterPro: Cytochrome c class I; hypothetical protein.
       0.452
Bd2614
Iron-sulfur cluster-binding protein; InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain; hypothetical protein.
       0.452
Bd2615
Conserved hypothetical protein.
       0.452
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.