STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pobRPutative transcriptional regulator; InterPro: AraC type helix-turn-helix,; hypothetical protein. (285 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.831
rp32
RNA polymerase sigma-32 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.831
cobB
Putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase; NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form.
  
  
 0.792
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.783
Bd2408
Putative DNA-binding protein; InterPro: Helix-turn-helix motif; hypothetical protein.
  
 
 0.760
manC
Mannose-6-phosphate isomerase/mannose-1-phosphate guanylyl transferase(MANC), InterPro: Mannose-6-phosphate isomerase type II; hypothetical protein.
  
 
 0.747
flgE
flhO, Flagellar basal body and hook proteins, Flagellar basal-body rod protein; hypothetical protein.
    
   0.741
flgG
Flagellar basal-body rod protein FlgG; hypothetical protein.
    
   0.741
malF
Maltose/maltodextrin transport permease homologue; InterPro: Bacterial extracellular solute-binding protein family 1; hypothetical protein.
     
 0.736
merR
Transcriptional regulator, MerR family; Probable transcription regulator; hypothetical protein.
  
 
 0.713
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.