STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bd3118Hypothetical protein predicted by Glimmer/Critica. (218 aa)    
Predicted Functional Partners:
Bd3117
InterPro: HD domain; hypothetical protein.
       0.823
Bd3119
Hypothetical protein predicted by Glimmer/Critica.
       0.823
cysE
Serine acetyltransferase; InterPro: Bacterial transferase hexapeptide repeat; hypothetical protein.
       0.810
Bd3120
ABC-type transport system involved in resistance to organic solvents, periplasmic component; hypothetical protein.
       0.796
Bd3121
ABC transport system involved in organic solvent resistance, ATP-binding protein; hypothetical protein.
       0.776
Bd3123
ABC transport system involved in organic solvent resistance, permease protein; hypothetical protein.
       0.776
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.774
Bd3125
Sensor histidine kinase; InterPro: Domain of unknown function DUF9; hypothetical protein.
       0.774
Bd3126
Sensor histidine kinase.
       0.774
Bd3115
Hypothetical protein predicted by Glimmer/Critica.
       0.591
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.