STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknPkn protein; InterPro: Serine/Threonine protein kinase, Eukaryotic protein kinase; hypothetical protein. (653 aa)    
Predicted Functional Partners:
Bd0397
InterPro: Protein phosphatase 2C domain; hypothetical protein.
 
 0.932
Bd0742
Sensory box/GGDEF domain protein, InterPro: Domain of unknown function DUF9; hypothetical protein.
  
 
 0.803
Bd0740
Conserved hypothetical protein.
   
  
 0.762
Bd0472
FHA domain containing protein; hypothetical protein.
 
 
 
 0.706
Bd1169
Large Ala/Glu-rich protein; Also similar Myosin heavy chain, skeletal muscle; hypothetical protein.
 
 
 0.705
Bd3149
Long-chain fatty-acid-CoA ligase; InterPro: AMP-dependent synthetase and ligase; hypothetical protein.
       0.668
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
     0.661
Bd3150
Hypothetical protein predicted by Glimmer/Critica.
  
    0.659
Bd3125
Sensor histidine kinase; InterPro: Domain of unknown function DUF9; hypothetical protein.
   
  
 0.657
Bd3151
AMP-ligase; Putative acyl-CoA ligase; hypothetical protein.
     
 0.652
Your Current Organism:
Bdellovibrio bacteriovorus HD100
NCBI taxonomy Id: 264462
Other names: B. bacteriovorus HD100, Bdellovibrio bacteriovorus DSM 50701, Bdellovibrio bacteriovorus str. HD100, Bdellovibrio bacteriovorus strain HD100
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.